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accessParquetData()
- Set up DuckDB connection with views for available data types
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biobakery_files()
- Read in extdata/biobakery_file_definitions.csv
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data_dict()
- Return a table with information about curated metadata features
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get_hf_parquet_urls()
- Get Parquet File URLs and Metadata from a Hugging Face Repository
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get_ref_info()
- Return a table with information about available parquet reference files.
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get_repo_info()
- Return a table with information about available Hugging Face repos.
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loadParquetData()
- Retrieve data from a DuckDB view and convert to Summarized Experiment
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load_ref()
- Load a single parquet reference file
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parquet_colinfo()
- Retrieve column info for parquet files based on original file type
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returnSamples()
- Return a TreeSummarizedExperiment with data based on sample data and feature data tables
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sampleMetadata
- Manually Curated Sample Metadata